Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    C2H2-type zinc finger family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817420, updated on 18-Sep-2024

    Summary

    Official Full Name
    C2H2-type zinc finger family protein
    Primary source
    TAIR:AT2G28710
    Locus tag
    AT2G28710
    See related
    Araport:AT2G28710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T11P11.2; T11P11_2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (12322386..12323584)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene AGAMOUS-like 46 Neighboring gene ncRNA Neighboring gene Histone superfamily protein Neighboring gene forkhead box protein G1

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_128432.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
     

    General protein information

    Preferred Names
    C2H2-type zinc finger family protein
    NP_180439.1
    • C2H2-type zinc finger family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G59820.1); Has 1339 Blast hits to 1281 proteins in 119 species: Archae - 0; Bacteria - 0; Metazoa - 497; Fungi - 0; Plants - 827; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12322386..12323584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128432.2NP_180439.1  C2H2-type zinc finger family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180439.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VQX8, Q9SI97
      Conserved Domains (1) summary
      pfam13912
      Location:3359
      zf-C2H2_6; C2H2-type zinc finger