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    SPS1 solanesyl diphosphate synthase 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844187, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SPS1
    Official Full Name
    solanesyl diphosphate synthase 1
    Primary source
    TAIR:AT1G78510
    Locus tag
    AT1G78510
    See related
    Araport:AT1G78510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtSPS1; solanesyl diphosphate synthase 1; T30F21.15; T30F21_15
    Summary
    Encodes one of the two paralogous solanesyl diphosphate synthases - SPS1 (At1g78510) and SPS2 (At1g17050) - that assemble the side-chain of plastoquinone-9 in plastids.
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    Genomic context

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    See SPS1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (29535060..29537482, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Prenyltransferase family protein Neighboring gene cytochrome P450, family 708, subfamily A, polypeptide 3 Neighboring gene Terpenoid cyclases family protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional modeling identifies paralogous solanesyl-diphosphate synthases that assemble the side chain of plastoquinone-9 in plastids. Block A, et al. J Biol Chem, 2013 Sep 20. PMID 23913686, Free PMC Article
    2. Fibrillin 5 Is Essential for Plastoquinone-9 Biosynthesis by Binding to Solanesyl Diphosphate Synthases in Arabidopsis. Kim EH, et al. Plant Cell, 2015 Oct. PMID 26432861, Free PMC Article
    3. Arabidopsis GERANYLGERANYL DIPHOSPHATE SYNTHASE 11 is a hub isozyme required for the production of most photosynthesis-related isoprenoids. Ruiz-Sola MÁ, et al. New Phytol, 2016 Jan. PMID 26224411
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084371.1
    NM_106498.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables farnesyltranstransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within plastoquinone biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    NOT involved_in ubiquinone biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    solanesyl diphosphate synthase 1
    NP_001077840.1
    • solanesyl diphosphate synthase 1 (SPS1); CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase-related (InterPro:IPR017446), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 16694 Blast hits to 16671 proteins in 2946 species: Archae - 341; Bacteria - 9481; Metazoa - 459; Fungi - 560; Plants - 421; Viruses - 0; Other Eukaryotes - 5432 (source: NCBI BLink).
    NP_177972.2
    • solanesyl diphosphate synthase 1 (SPS1); CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 16774 Blast hits to 16749 proteins in 2959 species: Archae - 341; Bacteria - 9542; Metazoa - 459; Fungi - 581; Plants - 425; Viruses - 0; Other Eukaryotes - 5426 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29535060..29537482 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106498.4 → NP_177972.2  solanesyl diphosphate synthase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177972.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MQY5, Q0WMS5, Q8S948, Q9SYN0
      UniProtKB/TrEMBL
      A0A178WBY5
      Conserved Domains (1) summary
      PLN02857
      Location:1 → 406
      PLN02857; octaprenyl-diphosphate synthase

    2. NM_001084371.1 → NP_001077840.1  solanesyl diphosphate synthase 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077840.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WVH3, A0A654ERL5
      Conserved Domains (1) summary
      PLN02857
      Location:2 → 367
      PLN02857; octaprenyl-diphosphate synthase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S948.1

    Gene LinkOut

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