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    Tudor/PWWP/MBT domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819428, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tudor/PWWP/MBT domain-containing protein
    Primary source
    TAIR:AT2G48160
    Locus tag
    AT2G48160
    See related
    Araport:AT2G48160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11L15.11; F11L15_11; HUA2 LIKE 2; HULK2
    Summary
    HUA and HUA-LIKE (HULK) genes act redundantly to regulate a subset of essential genes, with some (or all) family members also having specific functions.
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (19689324..19696821, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene ncRNA Neighboring gene glutathione peroxidase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A plant-specific HUA2-LIKE (HULK) gene family in Arabidopsis thaliana is essential for development. Jali SS, et al. Plant J, 2014 Oct. PMID 25070081, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001337303.1
    NM_180154.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tudor/PWWP/MBT domain-containing protein
    NP_850485.2
    • Tudor/PWWP/MBT domain-containing protein; CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT3G63070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19689324..19696821 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180154.7 → NP_850485.2  Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850485.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IN78, Q8GYT7
      Conserved Domains (2) summary
      cd05834
      Location:20 → 107
      HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
      smart00582
      Location:843 → 974
      RPR; domain present in proteins, which are involved in regulation of nuclear pre-mRNA

    2. NM_001337303.1 → NP_001324922.1  Tudor/PWWP/MBT domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IN78, Q8GYT7
      UniProtKB/TrEMBL
      A0A1P8B1R0
    Nucleotide Protein
    Heading Accession and Version

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