U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843136, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Primary source
    TAIR:AT1G68080
    Locus tag
    AT1G68080
    See related
    Araport:AT1G68080
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T23K23.7; T23K23_7
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (25517411..25519653)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene flavin-binding, kelch repeat, f box 1 Neighboring gene microtubule-associated proteins 70-1 Neighboring gene Zinc finger, C3HC4 type (RING finger) family protein Neighboring gene annexin 5 Neighboring gene ZIP metal ion transporter family Neighboring gene ENTH/ANTH/VHS superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001084320.2
    NM_001084321.2
    NM_001334343.1
    NM_001334344.1
    NM_105478.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables procollagen-proline 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in collagen metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    NP_001077789.1
    • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 70 Blast hits to 70 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    NP_001077790.1
    • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 70 Blast hits to 70 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 14; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    NP_001319341.1
    • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_176975.2
    • 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 25 Blast hits to 25 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25517411..25519653
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334343.1 → NP_001319341.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDW4, A0A654EM02, B3H6C9, Q9C9X2

    2. NM_001334344.1 → NP_001322794.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AV42, A0A654EM02
      Conserved Domains (1) summary
      pfam13640
      Location:87 → 149
      2OG-FeII_Oxy_3; 2OG-Fe(II) oxygenase superfamily

    3. NM_105478.4 → NP_176975.2  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176975.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EM02, Q5PP31
      Conserved Domains (1) summary
      pfam13640
      Location:93 → 175
      2OG-FeII_Oxy_3; 2OG-Fe(II) oxygenase superfamily

    4. NM_001084321.2 → NP_001077790.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077790.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EM02, Q45GM3
      Conserved Domains (1) summary
      cl21496
      Location:62 → 155
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

    5. NM_001084320.2 → NP_001077789.1  2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077789.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2E792, A0A7G2E7C0, Q45GM2
      Conserved Domains (1) summary
      pfam13640
      Location:93 → 155
      2OG-FeII_Oxy_3; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.