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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842617, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G63130
    Locus tag
    AT1G63130
    See related
    Araport:AT1G63130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16M19.5; F16M19_5; RNA PROCESSING FACTOR 6; RPF6
    Summary
    Transacting siRNA generating locus. Its derived siR9as targets AT1G62930 for cleavage. Itself is targeted by TAS2-derived ta-siR2140 for cleavage.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (23412518..23415155)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GPI transamidase subunit PIG-U Neighboring gene miscRNA Neighboring gene RHOMBOID-like 2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene O-methyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334067.1
    NM_104991.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_176501.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 68218 Blast hits to 15140 proteins in 318 species: Archae - 7; Bacteria - 75; Metazoa - 1255; Fungi - 1382; Plants - 62771; Viruses - 0; Other Eukaryotes - 2728 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23412518..23415155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104991.3 → NP_176501.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176501.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAN0
      Conserved Domains (4) summary
      TIGR00756
      Location:362 → 396
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:328 → 355
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:390 → 423
      PPR_1; PPR repeat
      pfam13041
      Location:324 → 372
      PPR_2; PPR repeat family

    2. NM_001334067.1 → NP_001323319.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9CAN0
      Conserved Domains (4) summary
      TIGR00756
      Location:362 → 396
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:328 → 355
      PPR; PPR repeat [structural motif]
      pfam12854
      Location:390 → 423
      PPR_1; PPR repeat
      pfam13041
      Location:324 → 372
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CAN0.1

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