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    Small nuclear ribonucleoprotein family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819950, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Small nuclear ribonucleoprotein family protein
    Primary source
    TAIR:AT3G07590
    Locus tag
    AT3G07590
    See related
    Araport:AT3G07590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (2423051..2424594)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein Neighboring gene uncharacterized protein Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene ncRNA Neighboring gene Transcription factor jumonji (jmjC) domain-containing protein Neighboring gene glycosyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Nuclear Ribonucleoprotein SmD1 Interplays with Splicing, RNA Quality Control, and Posttranscriptional Gene Silencing in Arabidopsis. Elvira-Matelot E, et al. Plant Cell, 2016 Feb. PMID 26842463, Free PMC Article
    2. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202908.2
    NM_001337723.1
    NM_111638.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulatory ncRNA-mediated post-transcriptional gene silencing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in spliceosomal snRNP assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear speck IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Small nuclear ribonucleoprotein family protein
    NP_001189837.1
    • Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G02840.1).
    NP_187416.1
    • Small nuclear ribonucleoprotein family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT4G02840.1); Has 1173 Blast hits to 1172 proteins in 226 species: Archae - 0; Bacteria - 2; Metazoa - 423; Fungi - 342; Plants - 215; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2423051..2424594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001202908.2 → NP_001189837.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189837.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LP96, C0Z3G9, Q9SSF1
      UniProtKB/TrEMBL
      A0A178VG63, A0A5S9XA14, A0A654F6Q6
      Conserved Domains (1) summary
      cd01724
      Location:2 → 92
      Sm_D1; Sm protein D1

    2. NM_001337723.1 → NP_001326434.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSF1
      Conserved Domains (1) summary
      cl00259
      Location:4 → 66
      Sm_like; Sm and related proteins

    3. NM_111638.5 → NP_187416.1  Small nuclear ribonucleoprotein family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187416.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LP96, C0Z3G9, Q9SSF1
      UniProtKB/TrEMBL
      A0A178VG63, A0A5S9XA14, A0A654F6Q6
      Conserved Domains (1) summary
      cd01724
      Location:2 → 92
      Sm_D1; Sm protein D1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SSF1.1

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