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    DNA binding / DNA-directed RNA polymerase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820920, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DNA binding / DNA-directed RNA polymerase
    Primary source
    TAIR:AT3G16680
    Locus tag
    AT3G16680
    See related
    Araport:AT3G16680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (5683336..5684278)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Pollen Ole e 1 allergen and extensin family protein Neighboring gene Nodulin MtN3 family protein Neighboring gene Fumarylacetoacetate (FAA) hydrolase family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-directed 5'-3' RNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    DNA binding / DNA-directed RNA polymerase
    NP_188290.1
    • DNA binding;DNA-directed RNA polymerases; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783); BEST Arabidopsis thaliana protein match is: Eukaryotic rpb5 RNA polymerase subunit family protein (TAIR:AT3G22320.1); Has 450 Blast hits to 450 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 147; Fungi - 164; Plants - 81; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      5683336..5684278
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112541.2 → NP_188290.1  DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188290.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XDB2, A0A654F7V0, F4J2R9
      Conserved Domains (1) summary
      cl29798
      Location:1 → 78
      RNA_pol_Rpb5_N; RNA polymerase Rpb5, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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