Single hybrid motif superfamily protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: Single hybrid motif superfamily protein
Primary source: TAIR:AT3G15690
Locus tag: AT3G15690
See related: Araport:AT3G15690
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 9

Sequence:: Chromosome: 3; NC_003074.8 (5316916..5320121)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

A role for BADC3(AT3G15690) in the irreversible feedback inhibition of acetyl CoA carboxylase and fatty acids accumulation in seeds.
Title: Biotin Attachment Domain-Containing Proteins Irreversibly Inhibit Acetyl CoA Carboxylase.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001338182.1

Supported by ESTs:

NM_112439.4

Supported by ESTs:

NM_180260.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within fatty acid biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Single hybrid motif superfamily protein

NP_188190.1

Single hybrid motif superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G52670.1); Has 3111 Blast hits to 3110 proteins in 1263 species: Archae - 10; Bacteria - 2402; Metazoa - 8; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink).

NP_850591.1

Single hybrid motif superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G52670.1); Has 1933 Blast hits to 1932 proteins in 837 species: Archae - 0; Bacteria - 1562; Metazoa - 6; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 246 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003074.8 Reference assembly

Range

5316916..5320121

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_112439.4 → NP_188190.1 Single hybrid motif superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_188190.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VEN8, Q8GRT9

Conserved Domains (2) summary

cd06850
Location:200 → 252

biotinyl_domain; The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, ...

PRK06302
Location:100 → 252

PRK06302; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
NM_001338182.1 → NP_001325963.1 Single hybrid motif superfamily protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VEN8, A0A1I9LMU4
NM_180260.1 → NP_850591.1 Single hybrid motif superfamily protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_850591.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VEN8, F4J017

Conserved Domains (2) summary

PLN02983
Location:1 → 240

PLN02983; biotin carboxyl carrier protein of acetyl-CoA carboxylase

cl11404
Location:200 → 240

Biotinyl_lipoyl_domains; Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, ...