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    RSY3 Adenine nucleotide alpha hydrolases-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822052, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RSY3
    Official Full Name
    Adenine nucleotide alpha hydrolases-like superfamily protein
    Primary source
    TAIR:AT3G24560
    Locus tag
    AT3G24560
    See related
    Araport:AT3G24560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    RASPBERRY 3
    Summary
    novel gene involved in embryogenesis
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    Genomic context

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    See RSY3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (8963770..8966616)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene proline extensin-like receptor kinase 1 Neighboring gene Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene F-box and associated interaction domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RASPBERRY3 gene encodes a novel protein important for embryo development. Apuya NR, et al. Plant Physiol, 2002 Jun. PMID 12068112, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001338693.1
    NM_113367.3
    NM_202628.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ligase activity, forming carbon-nitrogen bonds IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within chloroplast organization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within suspensor development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Adenine nucleotide alpha hydrolases-like superfamily protein
    NP_001319632.1
    • RASPBERRY 3 (RSY3); CONTAINS InterPro DOMAIN/s: PP-loop (InterPro:IPR011063); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_566753.1
    • RASPBERRY 3 (RSY3); CONTAINS InterPro DOMAIN/s: PP-loop (InterPro:IPR011063); Has 1377 Blast hits to 1377 proteins in 336 species: Archae - 0; Bacteria - 610; Metazoa - 2; Fungi - 15; Plants - 23; Viruses - 0; Other Eukaryotes - 727 (source: NCBI BLink).
    NP_974357.1
    • RASPBERRY 3 (RSY3); FUNCTIONS IN: nucleotide binding, ligase activity, forming carbon-nitrogen bonds, ATP binding; INVOLVED IN: chloroplast organization, suspensor development, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lysidine-tRNA(Ile) synthetase, N-terminal (InterPro:IPR012795), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PP-loop (InterPro:IPR011063); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8963770..8966616
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113367.3 → NP_566753.1  Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566753.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94BN3
      Conserved Domains (2) summary
      COG0037
      Location:8 → 187
      TilS; tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]
      cl00292
      Location:8 → 93
      AANH_like; Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.

    2. NM_202628.2 → NP_974357.1  Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974357.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2ESS0, F4J7P7
      Conserved Domains (2) summary
      COG0037
      Location:86 → 385
      TilS; tRNA(Ile)-lysidine synthase TilS/MesJ [Translation, ribosomal structure and biogenesis]
      pfam01171
      Location:86 → 291
      ATP_bind_3; PP-loop family

    3. NM_001338693.1 → NP_001319632.1  Adenine nucleotide alpha hydrolases-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B4F7Q5, Q3EB11
    Nucleotide Protein
    Heading Accession and Version

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