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    MPC maternally expressed pab C-terminal [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821469, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MPC
    Official Full Name
    maternally expressed pab C-terminal
    Primary source
    TAIR:AT3G19350
    Locus tag
    AT3G19350
    See related
    Araport:AT3G19350
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    maternally expressed pab C-terminal
    Summary
    Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.
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    Genomic context

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    See MPC in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (6705474..6706127)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene transmembrane protein, putative (DUF677) Neighboring gene aminopeptidase (DUF3754) Neighboring gene Zinc finger (CCCH-type) family protein Neighboring gene filament-like protein (DUF869)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadenylate binding proteins. Tiwari S, et al. Plant Cell, 2008 Sep. PMID 18796636, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data show a novel imprinted gene, MATERNALLY EXPRESSED PAB C-TERMINAL (MPC), which encodes the C-terminal domain of poly(A) binding proteins (PABPs). PABPs play roles in mRNA stability and translation.
      Title: MATERNALLY EXPRESSED PAB C-TERMINAL, a novel imprinted gene in Arabidopsis, encodes the conserved C-terminal domain of polyadenylate binding proteins.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_112822.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables poly(A) binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of endosperm development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in seed morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    maternally expressed pab C-terminal
    NP_188566.1
    • maternally expressed pab C-terminal (MPC); CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 8 (TAIR:AT1G49760.2); Has 865 Blast hits to 863 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 523; Fungi - 105; Plants - 148; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6705474..6706127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112822.3 → NP_188566.1  maternally expressed pab C-terminal [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188566.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LT82
      UniProtKB/TrEMBL
      A0A5S9XDM2, A0A654F8N5
      Conserved Domains (1) summary
      pfam00658
      Location:22 → 86
      PABP; Poly-adenylate binding protein, unique domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LT82.1

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