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    NCED6 nine-cis-epoxycarotenoid dioxygenase 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822008, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NCED6
    Official Full Name
    nine-cis-epoxycarotenoid dioxygenase 6
    Primary source
    TAIR:AT3G24220
    Locus tag
    AT3G24220
    See related
    Araport:AT3G24220
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATNCED6; nine-cis-epoxycarotenoid dioxygenase 6; NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6
    Summary
    A member of gene NCED-related gene family, encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene declines during the first 12h of imbibition.
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    Genomic context

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    See NCED6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (8761419..8763303)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Ankyrin repeat family protein Neighboring gene CLAVATA3/ESR-RELATED 19 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Induction of 9-cis-epoxycarotenoid dioxygenase in Arabidopsis thaliana seeds enhances seed dormancy. Martínez-Andújar C, et al. Proc Natl Acad Sci U S A, 2011 Oct 11. PMID 21969557, Free PMC Article
    2. Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy. Lefebvre V, et al. Plant J, 2006 Feb. PMID 16412079
    3. Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase, a key enzyme in abscisic acid biosynthesis in Arabidopsis. Iuchi S, et al. Plant J, 2001 Aug. PMID 11532178
    4. Molecular characterization of the Arabidopsis 9-cis epoxycarotenoid dioxygenase gene family. Tan BC, et al. Plant J, 2003 Jul. PMID 12834401
    5. Regulation of hormone metabolism in Arabidopsis seeds: phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism. Seo M, et al. Plant J, 2006 Nov. PMID 17010113

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. inducing expression of NCED6 during seed development suppressed vivipary, precocious germination of developing seeds
      Title: Induction of 9-cis-epoxycarotenoid dioxygenase in Arabidopsis thaliana seeds enhances seed dormancy.
    2. AtNCED6 is required for abscisic acid biosynthesis during seed development.
      Title: Functional analysis of Arabidopsis NCED6 and NCED9 genes indicates that ABA synthesized in the endosperm is involved in the induction of seed dormancy.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    NM_113327.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 9-cis-epoxycarotenoid dioxygenase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables 9-cis-epoxycarotenoid dioxygenase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within abscisic acid biosynthetic process TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to red light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to red or far red light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nine-cis-epoxycarotenoid dioxygenase 6
    NP_189064.1
    • nine-cis-epoxycarotenoid dioxygenase 6 (NCED6); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 9 (TAIR:AT1G78390.1); Has 2907 Blast hits to 2870 proteins in 485 species: Archae - 16; Bacteria - 803; Metazoa - 275; Fungi - 199; Plants - 893; Viruses - 0; Other Eukaryotes - 721 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8761419..8763303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113327.3 → NP_189064.1  nine-cis-epoxycarotenoid dioxygenase 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189064.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LRM7
      UniProtKB/TrEMBL
      A0A178V931, A0A5S9XFF7, A0A654FBI7, A0A7G2EN28
      Conserved Domains (1) summary
      PLN02258
      Location:1 → 576
      PLN02258; 9-cis-epoxycarotenoid dioxygenase NCED
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LRM7.1

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