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    Leucine-rich repeat (LRR) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821435, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Leucine-rich repeat (LRR) family protein
    Primary source
    TAIR:AT3G19020
    Locus tag
    AT3G19020
    See related
    Araport:AT3G19020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (6558964..6562377, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene ncRNA Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene miscRNA Neighboring gene transcription initiation factor TFIID subunit 1b-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RALF4/19 peptides interact with LRX proteins to control pollen tube growth in Arabidopsis. Mecchia MA, et al. Science, 2017 Dec 22. PMID 29242232
    2. Whole-genome comparison of leucine-rich repeat extensins in Arabidopsis and rice. A conserved family of cell wall proteins form a vegetative and a reproductive clade. Baumberger N, et al. Plant Physiol, 2003 Mar. PMID 12644681, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001338376.1
    NM_112788.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of cell wall ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube growth IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Leucine-rich repeat (LRR) family protein
    NP_188532.2
    • Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G49490.1); Has 706755 Blast hits to 161426 proteins in 4337 species: Archae - 1652; Bacteria - 156223; Metazoa - 226544; Fungi - 92124; Plants - 115331; Viruses - 14004; Other Eukaryotes - 100877 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6558964..6562377 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112788.3 → NP_188532.2  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188532.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8RWX5, Q9LJ64
      UniProtKB/TrEMBL
      A0A178V723, A0A5S9XDR9, A0A654F8L7
      Conserved Domains (3) summary
      PLN00113
      Location:84 → 349
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:167 → 193
      LRR_RI; leucine-rich repeat [structural motif]
      NF033839
      Location:420 → 621
      PspC_subgroup_2; pneumococcal surface protein PspC, LPXTG-anchored form

    2. NM_001338376.1 → NP_001327283.1  Leucine-rich repeat (LRR) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LRU7, A0A5S9XDR9, A0A654F8L7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LJ64.1

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