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    transmembrane protein, putative (DUF1216) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822510, updated on 18-Sep-2024

    Summary

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    Official Full Name
    transmembrane protein, putative (DUF1216)
    Primary source
    TAIR:AT3G28780
    Locus tag
    AT3G28780
    See related
    Araport:AT3G28780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (10805857..10808461, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene 3-dehydroquinate synthase Neighboring gene transmembrane protein, putative (DUF1216) Neighboring gene mutator-like transposase Neighboring gene transmembrane protein, putative (DUF1216)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A large-scale genetic screen in Arabidopsis to identify genes involved in pollen exine production. Dobritsa AA, et al. Plant Physiol, 2011 Oct. PMID 21849515, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113799.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen exine formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein, putative (DUF1216)
    NP_189520.2
    • Protein of unknown function (DUF1216); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1216 (InterPro:IPR009605); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1216) (TAIR:AT3G28840.1); Has 491362 Blast hits to 127895 proteins in 3934 species: Archae - 1891; Bacteria - 181160; Metazoa - 101488; Fungi - 34030; Plants - 43823; Viruses - 7305; Other Eukaryotes - 121665 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      10805857..10808461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113799.5 → NP_189520.2  transmembrane protein, putative (DUF1216) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189520.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FCN4, F4J0E6, Q681A9
      Conserved Domains (2) summary
      PTZ00473
      Location:212 → 272
      PTZ00473; Plasmodium Vir superfamily; Provisional
      pfam06746
      Location:71 → 169
      DUF1216; Protein of unknown function (DUF1216)
    Nucleotide Protein
    Heading Accession and Version

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