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    TRFL9 TRF-like 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820436, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRFL9
    Official Full Name
    TRF-like 9
    Primary source
    TAIR:AT3G12560
    Locus tag
    AT3G12560
    See related
    Araport:AT3G12560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTBP2; TELOMERIC DNA-BINDING PROTEIN 2; TRF-like 9
    Summary
    Encodes a telomeric DNA-binding protein.
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    Genomic context

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    See TRFL9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (3981880..3985625, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ternary complex factor MIP1 leucine-zipper protein (Protein of unknown function, DUF547) Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein Neighboring gene XH/XS domain-containing protein Neighboring gene FYD Neighboring gene heat shock protein 70

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant telomeric DNA and induce DNA bending in vitro. Hwang MG, et al. Mol Genet Genomics, 2005 Mar. PMID 15688221
    2. A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis. Karamysheva ZN, et al. J Biol Chem, 2004 Nov 12. PMID 15364931
    3. An armadillo-domain protein participates in a telomerase interaction network. Dokládal L, et al. Plant Mol Biol, 2018 Jul. PMID 29948659
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtTBP2 encodes a protein that binds plant telomeric DNA and induces DNA bending in vitro.
      Title: AtTBP2 and AtTRP2 in Arabidopsis encode proteins that bind plant telomeric DNA and induce DNA bending in vitro.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001338001.1
    NM_112091.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA binding, bending IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables telomeric DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRF-like 9
    NP_187862.1
    • TRF-like 9 (TRFL9); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: telomeric DNA binding protein 1 (TAIR:AT5G13820.1); Has 334 Blast hits to 327 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 306; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      3981880..3985625 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112091.4 → NP_187862.1  TRF-like 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187862.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5QKS3, Q9C7B1, Q9LHB0
      UniProtKB/TrEMBL
      A0A178VNC8, A0A5S9XCU8
      Conserved Domains (1) summary
      cd11660
      Location:510 → 560
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    2. NM_001338001.1 → NP_001327482.1  TRF-like 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q5QKS3, Q9C7B1, Q9LHB0
      UniProtKB/TrEMBL
      A0A178VNC8, A0A5S9XCU8
      Conserved Domains (1) summary
      cd11660
      Location:510 → 560
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C7B1.1

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