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    CP29 chloroplast RNA-binding protein 29 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824514, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CP29
    Official Full Name
    chloroplast RNA-binding protein 29
    Primary source
    TAIR:AT3G53460
    Locus tag
    AT3G53460
    See related
    Araport:AT3G53460
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    chloroplast RNA-binding protein 29
    Summary
    Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast.
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    Genomic context

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    See CP29 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    5
    Sequence:
    Chromosome: 3; NC_003074.8 (19818975..19821519, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Putative lysine decarboxylase family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene pleiotropic drug resistance 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a pigment cluster catalysing fast photoprotective quenching response in CP29. Guardini Z, et al. Nat Plants, 2020 Mar. PMID 32170280
    2. Band shape heterogeneity of the low-energy chlorophylls of CP29: absence of mixed binding sites and excitonic interactions. Belgio E, et al. Biochemistry, 2010 Feb 9. PMID 20047285
    3. Zeaxanthin radical cation formation in minor light-harvesting complexes of higher plant antenna. Avenson TJ, et al. J Biol Chem, 2008 Feb 8. PMID 17991753
    4. Combinatory actions of CP29 phosphorylation by STN7 and stability regulate leaf age-dependent disassembly of photosynthetic complexes. Poudyal RS, et al. Sci Rep, 2020 Jun 24. PMID 32581255, Free PMC Article
    5. High light induced disassembly of photosystem II supercomplexes in Arabidopsis requires STN7-dependent phosphorylation of CP29. Fristedt R, et al. PLoS One, 2011. PMID 21915352, Free PMC Article

    See all (22) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Combinatory actions of CP29 phosphorylation by STN7 and stability regulate leaf age-dependent disassembly of photosynthetic complexes.
      Title: Combinatory actions of CP29 phosphorylation by STN7 and stability regulate leaf age-dependent disassembly of photosynthetic complexes.
    2. Identification of a pigment cluster catalysing fast photoprotective quenching response in CP29.
      Title: Identification of a pigment cluster catalysing fast photoprotective quenching response in CP29.
    3. Data indicate that minor light-harvesting complexes (Lhcs) CP24, CP26 and CP29 are crucial for the functioning and macro-organization of photosystem II.
      Title: Disturbed excitation energy transfer in Arabidopsis thaliana mutants lacking minor antenna complexes of photosystem II.
    4. CP31A and CP29A associate with large, overlapping sets of chloroplast transcripts.
      Title: Arabidopsis chloroplast RNA binding proteins CP31A and CP29A associate with large transcript pools and confer cold stress tolerance by influencing multiple chloroplast RNA processing steps.
    5. High light induced disassembly of photosystem II supercomplexes in Arabidopsis requires STN7-dependent phosphorylation of CP29.
      Title: High light induced disassembly of photosystem II supercomplexes in Arabidopsis requires STN7-dependent phosphorylation of CP29.
    6. Within the red absorbing antenna chlorophylls (chls) of a single chl-protein complex in photosystem II antenna complex CP29, a marked spectral band shape heterogeneity exists, wherein no evidence of significantly strong excitonic interactions is found.
      Title: Band shape heterogeneity of the low-energy chlorophylls of CP29: absence of mixed binding sites and excitonic interactions.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001203150.1
    NM_180361.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables poly(U) RNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within RNA splicing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within RNA stabilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in RNA stabilization IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in cold acclimation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast stroma HDA PubMed 
    located_in chloroplast stroma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast thylakoid HDA PubMed 
    located_in cytosol HDA PubMed 
    located_in thylakoid HDA PubMed 
    located_in thylakoid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chloroplast RNA-binding protein 29
    NP_001190078.1
    • chloroplast RNA-binding protein 29 (CP29); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1).
    NP_001190079.1
    • chloroplast RNA-binding protein 29 (CP29); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1).
    NP_190914.1
    • chloroplast RNA-binding protein 29 (CP29); FUNCTIONS IN: RNA binding, poly(U) RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1); Has 992946 Blast hits to 485878 proteins in 21699 species: Archae - 20986; Bacteria - 587269; Metazoa - 197754; Fungi - 28530; Plants - 64033; Viruses - 69323; Other Eukaryotes - 25051 (source: NCBI BLink).
    NP_850692.2
    • chloroplast RNA-binding protein 29 (CP29); FUNCTIONS IN: RNA binding, poly(U) RNA binding; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G37220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19818975..19821519 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115206.3 → NP_190914.1  chloroplast RNA-binding protein 29 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190914.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43349, Q94BT1, Q9LFH2
      UniProtKB/TrEMBL
      A0A178VFP8, A0A5S9XKG3, A0A654FIG3
      Conserved Domains (2) summary
      cd21608
      Location:258 → 333
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
      cl17169
      Location:100 → 178
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_001203149.1 → NP_001190078.1  chloroplast RNA-binding protein 29 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190078.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43349, Q94BT1, Q9LFH2
      UniProtKB/TrEMBL
      A0A178VFP8, A0A5S9XKG3, A0A654FIG3
      Conserved Domains (2) summary
      cd21608
      Location:258 → 333
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
      cl17169
      Location:100 → 178
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_001203150.1 → NP_001190079.1  chloroplast RNA-binding protein 29 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190079.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VFP8, F4JAF3
      Conserved Domains (2) summary
      cd12399
      Location:279 → 355
      RRM_HP0827_like; RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins
      cl17169
      Location:100 → 194
      RRM_SF; RNA recognition motif (RRM) superfamily

    4. NM_180361.2 → NP_850692.2  chloroplast RNA-binding protein 29 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850692.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43349, Q94BT1, Q9LFH2
      UniProtKB/TrEMBL
      A0A178VFP8, A0A5S9XKG3, A0A654FIG3
      Conserved Domains (2) summary
      cd21608
      Location:258 → 333
      RRM2_NsCP33_like; RNA recognition motif 2 (RRM2) found in Nicotiana sylvestris chloroplastic 33 kDa ribonucleoprotein (NsCP33) and similar proteins
      cl17169
      Location:100 → 178
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q43349.2

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