U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    GDI2 RAB GDP dissociation inhibitor 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825162, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    GDI2
    Official Full Name
    RAB GDP dissociation inhibitor 2
    Primary source
    TAIR:AT3G59920
    Locus tag
    AT3G59920
    See related
    Araport:AT3G59920
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGDI2; RAB GDP dissociation inhibitor 2; RAB GDP DISSOCIATION INHIBITOR 2
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See GDI2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Sequence:
    Chromosome: 3; NC_003074.8 (22134951..22138546)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Ankyrin repeat family protein Neighboring gene ncRNA Neighboring gene tRNA-Val Neighboring gene tRNA-Asp

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. AtGDI2, a novel Arabidopsis gene encoding a Rab GDP dissociation inhibitor. Ueda T, et al. Gene, 1998 Jan 5. PMID 9461425
    2. Proteomic analyses of apoplastic proteins from germinating Arabidopsis thaliana pollen. Ge W, et al. Biochim Biophys Acta, 2011 Dec. PMID 21798377, Free PMC Article
    3. VH1/BRL2 receptor-like kinase interacts with vascular-specific adaptor proteins VIT and VIK to influence leaf venation. Ceserani T, et al. Plant J, 2009 Mar. PMID 19000166, Free PMC Article
    4. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    5. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_115855.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables Rab GDP-dissociation inhibitor activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in small GTPase-mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in apoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    RAB GDP dissociation inhibitor 2
    NP_191551.1
    • RAB GDP dissociation inhibitor 2 (GDI2); FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: regulation of GTPase activity, protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: guanosine nucleotide diphosphate dissociation inhibitor 1 (TAIR:AT2G44100.1); Has 1316 Blast hits to 1212 proteins in 257 species: Archae - 2; Bacteria - 2; Metazoa - 653; Fungi - 287; Plants - 181; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22134951..22138546
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115855.4 → NP_191551.1  RAB GDP dissociation inhibitor 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191551.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O24653
      UniProtKB/TrEMBL
      A0A178VFJ4, A0A5S9XMM8, A0A7G2EDK6
      Conserved Domains (1) summary
      pfam00996
      Location:1 → 433
      GDI; GDP dissociation inhibitor
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O24653.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools