transferring glycosyl group transferase [Arabidopsis thaliana (thale cress)] - Gene

Summary

Official Full Name: transferring glycosyl group transferase
Primary source: TAIR:AT5G06550
Locus tag: AT5G06550
See related: Araport:AT5G06550
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F15M7.8; F15M7_8; JMJ22; Jumonji domain-containing protein 22
Summary: Encodes a HR demethylase that acts as a positive regulator of seed germination in the PHYB-PIL5-SOM pathway.
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Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

NM_120738.5

Function	Evidence Code	Pubs
enables cis-regulatory region sequence-specific DNA binding	IDA Inferred from Direct Assay more info	PubMed
enables histone demethylase activity	IGI Inferred from Genetic Interaction more info	PubMed
enables transcription cis-regulatory region binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in epigenetic regulation of gene expression	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within_positive_effect gibberellin mediated signaling pathway	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within positive regulation of seed germination	IGI Inferred from Genetic Interaction more info	PubMed
involved_in positive regulation of seed germination	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in regulation of photomorphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in response to red light	IEP Inferred from Expression Pattern more info	PubMed
involved_in response to red light	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

NP_196273.3

CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).

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The following sections contain reference sequences that belong to a specific genome build. Explain