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    MYR1 myb-related protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831942, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MYR1
    Official Full Name
    myb-related protein 1
    Primary source
    TAIR:AT5G18240
    Locus tag
    AT5G18240
    See related
    Araport:AT5G18240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS MYB-RELATED PROTEIN 1; ATMYR1; MRG7.20; MRG7_20; myb-related protein 1
    Summary
    Encodes MYR1 (MYR1).
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    Genomic context

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    See MYR1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Sequence:
    Chromosome: 5; NC_003076.8 (6028285..6030802, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene O-Glycosyl hydrolases family 17 protein Neighboring gene transcription regulator NOT2/NOT3/NOT5 family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Alternative splicing of Myb-related genes MYR1 and MYR2 may modulate activities through changes in dimerization, localization, or protein folding. Zhao C, et al. Plant Signal Behav, 2013 Nov. PMID 24309816, Free PMC Article
    2. The Arabidopsis Myb genes MYR1 and MYR2 are redundant negative regulators of flowering time under decreased light intensity. Zhao C, et al. Plant J, 2011 May. PMID 21255164
    3. Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins. Zimmermann IM, et al. Plant J, 2004 Oct. PMID 15361138
    4. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. alternative splicing of MYR1 and MYR2 may result in changes in dimerization or protein folding resulting in changes in activity and abundance of MYR1 or MYR2 protein.
      Title: Alternative splicing of Myb-related genes MYR1 and MYR2 may modulate activities through changes in dimerization, localization, or protein folding.
    2. MYR1 is the component of a light intensity-dependent pathway that interacts with light-quality and photoperiod pathways affecting flowering time and organ elongation.
      Title: The Arabidopsis Myb genes MYR1 and MYR2 are redundant negative regulators of flowering time under decreased light intensity.
    3. survey of the MYB proteins that interact with R/B-like Bbasic helix-loop-helix proteins
      Title: Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001343542.1
    NM_121829.2
    NM_180511.1
    NM_203068.2
    NM_203069.2
    NM_203070.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    myb-related protein 1
    NP_197325.1
    • myb-related protein 1 (MYR1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_850842.1
    • myb-related protein 1 (MYR1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.1); Has 1692 Blast hits to 1683 proteins in 69 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 1662; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    NP_974797.1
    • myb-related protein 1 (MYR1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974798.1
    • myb-related protein 1 (MYR1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974799.1
    • myb-related protein 1 (MYR1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT3G04030.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6028285..6030802 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180511.1 → NP_850842.1  myb-related protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850842.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FEU5
      Conserved Domains (2) summary
      TIGR01557
      Location:45 → 101
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:145 → 184
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    2. NM_121829.2 → NP_197325.1  myb-related protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197325.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JWK0, Q84WH5, Q94B34, Q9C5Y6, Q9FK47
      UniProtKB/TrEMBL
      A0A5S9Y560, A0A654G284, A0A7G2F8H1
      Conserved Domains (2) summary
      TIGR01557
      Location:45 → 101
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:146 → 192
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    3. NM_203068.2 → NP_974797.1  myb-related protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974797.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FEU5
      Conserved Domains (2) summary
      TIGR01557
      Location:45 → 101
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:145 → 184
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    4. NM_203070.2 → NP_974799.1  myb-related protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974799.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FFF8
      Conserved Domains (2) summary
      TIGR01557
      Location:45 → 101
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:146 → 190
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    5. NM_203069.2 → NP_974798.1  myb-related protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974798.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JWK0, Q84WH5, Q94B34, Q9C5Y6, Q9FK47
      UniProtKB/TrEMBL
      A0A5S9Y560, A0A654G284, A0A7G2F8H1
      Conserved Domains (2) summary
      TIGR01557
      Location:45 → 101
      myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
      pfam14379
      Location:146 → 192
      Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

    6. NM_001343542.1 → NP_001331774.1  myb-related protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BEW2, A0A7G2FEU5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FK47.1

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