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    ABCI21 P-loop containing nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834434, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ABCI21
    Official Full Name
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Primary source
    TAIR:AT5G44110
    Locus tag
    AT5G44110
    See related
    Araport:AT5G44110
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN; ATNAP2; ATP-binding cassette A21; ATPOP1; MLN1.3; MLN1_3; POP1
    Summary
    Encodes a member of the NAP subfamily of ABC transporters.
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    Genomic context

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    See ABCI21 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (17753959..17755768, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Calcium-binding EF-hand family protein Neighboring gene casein kinase I-like 7 Neighboring gene RmlC-like cupins superfamily protein Neighboring gene FASCICLIN-like arabinogalactan protein 13 precursor

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RNase MRP RNA and RNase P activity in plants are associated with a Pop1p containing complex. Krehan M, et al. Nucleic Acids Res, 2012 Sep. PMID 22641852, Free PMC Article
    2. Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana. Kim A, et al. Plant Cell Rep, 2020 Apr. PMID 32016506, Free PMC Article
    3. phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. Tepperman JM, et al. Plant J, 2006 Dec. PMID 17076805
    4. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana.
      Title: Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana.
    2. The results provide evidence that in plants, Pop1p is associated with MRP RNAs and with the catalytic subunit of RNase P, either separately or in a single large complex.
      Title: RNase MRP RNA and RNase P activity in plants are associated with a Pop1p containing complex.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001036931.1
    NM_001085235.1
    NM_001344534.1
    NM_123778.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transmembrane transporter activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to sucrose stimulus IEP
    Inferred from Expression Pattern
    more info
    		  
    acts_upstream_of_or_within response to far red light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to red light IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    NP_001032008.1
    • POP1; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 81880 Blast hits to 79997 proteins in 3150 species: Archae - 1252; Bacteria - 69791; Metazoa - 943; Fungi - 1057; Plants - 1111; Viruses - 2; Other Eukaryotes - 7724 (source: NCBI BLink).
    NP_001078704.1
    • POP1; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 9575 Blast hits to 9549 proteins in 2190 species: Archae - 96; Bacteria - 7682; Metazoa - 239; Fungi - 361; Plants - 280; Viruses - 2; Other Eukaryotes - 915 (source: NCBI BLink).
    NP_199224.1
    • POP1; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G03905.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      17753959..17755768 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123778.3 → NP_199224.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199224.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LBC2, Q9XF19
      UniProtKB/TrEMBL
      A0A178U6I2, A0A5S9YD52, A0A7G2FFM3
      Conserved Domains (1) summary
      COG4586
      Location:31 → 236
      COG4586; ABC-type uncharacterized transport system, ATPase component [General function prediction only]

    2. NM_001085235.1 → NP_001078704.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078704.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MRG9
      Conserved Domains (1) summary
      cl21455
      Location:31 → 163
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. NM_001036931.1 → NP_001032008.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001032008.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K8R9
      Conserved Domains (2) summary
      pfam13304
      Location:43 → 198
      AAA_21; AAA domain, putative AbiEii toxin, Type IV TA system
      cl21455
      Location:13 → 196
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    4. NM_001344534.1 → NP_001332312.1  P-loop containing nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGQ9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XF19.1

    Gene LinkOut

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