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    PAT1 GRAS family transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834867, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PAT1
    Official Full Name
    GRAS family transcription factor
    Primary source
    TAIR:AT5G48150
    Locus tag
    AT5G48150
    See related
    Araport:AT5G48150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MIF21.4; MIF21_4; phytochrome a signal transduction 1
    Summary
    Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.
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    Genomic context

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    See PAT1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Sequence:
    Chromosome: 5; NC_003076.8 (19522238..19524788, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Phototropic-responsive NPH3 family protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene potyvirus VPg interacting protein (DUF1423) Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The regeneration conferring transcription factor complex ERF115-PAT1 coordinates a wound-induced response in root-knot nematode induced galls. Ribeiro C, et al. New Phytol, 2024 Jan. PMID 38044565
    2. The Arabidopsis thaliana mRNA decay factor PAT1 functions in osmotic stress responses and decaps ABA-responsive genes. Zuo Z, et al. FEBS Lett, 2021 Jan. PMID 33124072
    3. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Heyman J, et al. Nat Plants, 2016 Oct 31. PMID 27797356
    4. Two GRAS proteins, SCARECROW-LIKE21 and PHYTOCHROME A SIGNAL TRANSDUCTION1, function cooperatively in phytochrome A signal transduction. Torres-Galea P, et al. Plant Physiol, 2013 Jan. PMID 23109688, Free PMC Article
    5. PAT1, a new member of the GRAS family, is involved in phytochrome A signal transduction. Bolle C, et al. Genes Dev, 2000 May 15. PMID 10817761, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The regeneration conferring transcription factor complex ERF115-PAT1 coordinates a wound-induced response in root-knot nematode induced galls.
      Title: The regeneration conferring transcription factor complex ERF115-PAT1 coordinates a wound-induced response in root-knot nematode induced galls.
    2. The Arabidopsis thaliana mRNA decay factor PAT1 functions in osmotic stress responses and decaps ABA-responsive genes.
      Title: The Arabidopsis thaliana mRNA decay factor PAT1 functions in osmotic stress responses and decaps ABA-responsive genes.
    3. The heterodimeric transcription factor complex ETHYLENE RESPONSE FACTOR115 (ERF115)-PHYTOCHROME A SIGNAL TRANSDUCTION1 (PAT1) sustains meristem function by promoting cell renewal after stem cell loss.
      Title: The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    4. The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2.
      Title: The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2.
    5. Both PAT1 and SCL21 are involved in phyA-dependent signaling.
      Title: Two GRAS proteins, SCARECROW-LIKE21 and PHYTOCHROME A SIGNAL TRANSDUCTION1, function cooperatively in phytochrome A signal transduction.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001344761.1
    NM_001344762.1
    NM_124189.6
    NM_203174.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within callus formation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within red, far-red light phototransduction IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GRAS family transcription factor
    NP_199626.1
    • phytochrome a signal transduction 1 (PAT1); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 (TAIR:AT2G04890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_974903.1
    • phytochrome a signal transduction 1 (PAT1); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 (TAIR:AT2G04890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      19522238..19524788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124189.6 → NP_199626.1  GRAS family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199626.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYN7, Q9LDL7
      UniProtKB/TrEMBL
      A0A5S9YCQ0, A0A654G934, B9DGR4
      Conserved Domains (1) summary
      pfam03514
      Location:119 → 490
      GRAS; GRAS domain family

    2. NM_001344761.1 → NP_001332482.1  GRAS family transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYN7, Q9LDL7
      UniProtKB/TrEMBL
      A0A5S9YCQ0, A0A654G934, B9DGR4

    3. NM_203174.3 → NP_974903.1  GRAS family transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974903.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYN7, Q9LDL7
      UniProtKB/TrEMBL
      A0A5S9YCQ0, A0A654G934, B9DGR4
      Conserved Domains (1) summary
      pfam03514
      Location:119 → 490
      GRAS; GRAS domain family

    4. NM_001344762.1 → NP_001332483.1  GRAS family transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYN7, Q9LDL7
      UniProtKB/TrEMBL
      A0A5S9YCQ0, A0A654G934, B9DGR4
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LDL7.1

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