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    LINC4 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836706, updated on 18-Sep-2024

    Summary

    Official Symbol
    LINC4
    Official Full Name
    branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4
    Primary source
    TAIR:AT5G65770
    Locus tag
    AT5G65770
    See related
    Araport:AT5G65770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CROWDED NUCLEI 4; CRWN4; LITTLE NUCLEI4; MPA24.12; MPA24_12
    Summary
    Encodes a protein that localizes to the nuclear periphery and affects nuclear morphology.
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    Genomic context

    See LINC4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Sequence:
    Chromosome: 5; NC_003076.8 (26311311..26316025)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc ion binding protein Neighboring gene 2-oxoglutarate dehydrogenase, E1 component Neighboring gene Serine carboxypeptidase S28 family protein Neighboring gene branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) Neighboring gene myb domain protein 68 Neighboring gene ACC synthase 5

    Interactions

    General gene information

    NM_001161327.1
    NM_001203697.1
    NM_001203698.1
    NM_125974.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chromocenter PubMed 
    located_in cytoplasm PubMed 
    located_in nuclear lamina PubMed 
    located_in nuclear periphery PubMed 
    located_in nucleus  

    General protein information

    Preferred Names
    branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5);little nuclei4
    NP_001154799.1
    • LITTLE NUCLEI4 (LINC4); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2); Has 215167 Blast hits to 102614 proteins in 3709 species: Archae - 2940; Bacteria - 43360; Metazoa - 90724; Fungi - 17442; Plants - 11239; Viruses - 934; Other Eukaryotes - 48528 (source: NCBI BLink).
    NP_001190626.1
    • LITTLE NUCLEI4 (LINC4); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2).
    NP_001190627.1
    • ATBCAT-5; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei4 (TAIR:AT5G65770.3).
    NP_201378.5
    • LITTLE NUCLEI4 (LINC4); LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2); Has 212892 Blast hits to 104310 proteins in 3685 species: Archae - 2813; Bacteria - 44601; Metazoa - 88597; Fungi - 16519; Plants - 11430; Viruses - 898; Other Eukaryotes - 48034 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      26311311..26316025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203697.1 → NP_001190626.1  little nuclei4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190626.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JXK1, Q9FLH0
      UniProtKB/TrEMBL
      A0A5S9YHV6
      Conserved Domains (3) summary
      COG1196
      Location:50 → 741
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam02601
      Location:427 → 500
      Exonuc_VII_L; Exonuclease VII, large subunit
      cl19219
      Location:659 → 746
      DUF342; Protein of unknown function (DUF342)
    2. NM_001203698.1 → NP_001190627.1  branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190627.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GEJ1, F4JXK3
    3. NM_125974.5 → NP_201378.5  little nuclei4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_201378.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4JXK1, Q9FLH0
      UniProtKB/TrEMBL
      A0A5S9YHV6
      Conserved Domains (3) summary
      COG1196
      Location:50 → 741
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam02601
      Location:427 → 500
      Exonuc_VII_L; Exonuclease VII, large subunit
      cl19219
      Location:659 → 746
      DUF342; Protein of unknown function (DUF342)
    4. NM_001161327.1 → NP_001154799.1  little nuclei4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154799.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654GEJ1
      Conserved Domains (3) summary
      COG1196
      Location:66 → 768
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam02601
      Location:454 → 527
      Exonuc_VII_L; Exonuclease VII, large subunit
      cl19219
      Location:686 → 773
      DUF342; Protein of unknown function (DUF342)
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