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    CID6 CTC-interacting domain 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832629, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CID6
    Official Full Name
    CTC-interacting domain 6
    Primary source
    TAIR:AT5G25540
    Locus tag
    AT5G25540
    See related
    Araport:AT5G25540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CTC-interacting domain 6; T14C9.80; T14C9_80
    Summary
    Expressed protein contains PAM2 PABC interacting domain.
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    Genomic context

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    See CID6 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (8891475..8893036, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2A regulatory B subunit family protein Neighboring gene ncRNA Neighboring gene SPOC domain / Transcription elongation factor S-II protein Neighboring gene DNAJ heat shock family protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene CHY-type/CTCHY-type/RING-type Zinc finger protein Neighboring gene polyamine-modulated factor 1-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001343937.1
    NM_001343938.1
    NM_122465.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CTC-interacting domain 6
    NP_197936.1
    • CTC-interacting domain 6 (CID6); CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 5 (TAIR:AT5G11440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      8891475..8893036 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122465.4 → NP_197936.1  CTC-interacting domain 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197936.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQH9
      UniProtKB/TrEMBL
      A0A178U9D7, A0A5S9Y7P8
      Conserved Domains (1) summary
      cd14371
      Location:85 → 127
      CUE_CID7_like; CUE domain found in CTC-interacting domain proteins CID5, CID6, CID7 and similar proteins

    2. NM_001343937.1 → NP_001331122.1  CTC-interacting domain 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      C0Z2E4
      Conserved Domains (1) summary
      cd14371
      Location:85 → 125
      CUE_CID7_like; CUE domain found in CTC-interacting domain proteins CID5, CID6, CID7 and similar proteins

    3. NM_001343938.1 → NP_001331123.1  CTC-interacting domain 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NQH9
      UniProtKB/TrEMBL
      A0A178U9D7, A0A5S9Y7P8
      Conserved Domains (1) summary
      cd14371
      Location:85 → 127
      CUE_CID7_like; CUE domain found in CTC-interacting domain proteins CID5, CID6, CID7 and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NQH9.1

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