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    nucleoporin-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832143, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nucleoporin-like protein
    Primary source
    TAIR:AT5G20200
    Locus tag
    AT5G20200
    See related
    Araport:AT5G20200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F5O24.90; F5O24_90
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (6816612..6821827)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RNA polymerase II transcription mediator Neighboring gene Ribosomal protein L36 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene zinc knuckle (CCHC-type) family protein Neighboring gene ncRNA Neighboring gene blue-copper-binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nup82 functions redundantly with Nup136 in a salicylic acid-dependent defense response of Arabidopsis thaliana. Tamura K, et al. Nucleus, 2017 May 4. PMID 28071978, Free PMC Article
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_122027.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nucleoporin-like protein
    NP_197520.1
    • nucleoporin-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G10650.1); Has 1474 Blast hits to 595 proteins in 170 species: Archae - 0; Bacteria - 165; Metazoa - 255; Fungi - 183; Plants - 74; Viruses - 0; Other Eukaryotes - 797 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      6816612..6821827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122027.4 → NP_197520.1  nucleoporin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197520.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K465, Q8W4J6
    Nucleotide Protein
    Heading Accession and Version

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