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    LOC389602 uncharacterized LOC389602 [ Homo sapiens (human) ]

    Gene ID: 389602, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC389602
    Gene description
    uncharacterized LOC389602
    See related
    Ensembl:ENSG00000204876
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in duodenum (RPKM 10.6), small intestine (RPKM 9.8) and 5 other tissues See more
    Orthologs
    all
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    Genomic context

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    See LOC389602 in Genome Data Viewer
    Location:
    7q36.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (155961341..155968962)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (157148350..157155968)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (155754035..155761656)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:155597860-155598829 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:155598830-155599798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155607457-155608100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155608399-155608900 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:155628074-155629066 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:155632935-155634134 Neighboring gene sonic hedgehog signaling molecule Neighboring gene ReSE screen-validated silencer GRCh37_chr7:155638472-155638619 Neighboring gene MPRA-validated peak6864 silencer Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:155661375-155662574 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26904 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:155678617-155679816 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:155743904-155745103 Neighboring gene uncharacterized LOC124901788 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155745489-155745989 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155747182-155747910 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr7:155754590-155755789 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155766793-155767294 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155767295-155767794 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26905 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155790505-155791005 Neighboring gene uncharacterized LOC105375597 Neighboring gene ReSE screen-validated silencer GRCh37_chr7:155815211-155815389 Neighboring gene uncharacterized LOC124901789 Neighboring gene MPRA-validated peak6866 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26906 Neighboring gene SHH silencer LOC106049962 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:155855824-155857023 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:155857309-155858508 Neighboring gene H3K27ac hESC enhancer GRCh37_chr7:155884497-155884996 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155898353-155899150 Neighboring gene uncharacterized LOC105375603 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:155936145-155936722

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Homology

    Clone Names

    • FLJ42330, AC021218.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_144629.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC021218
      Related
      ENST00000683260.1

    2. NR_168378.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC021218

    3. NR_168379.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC021218

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      155961341..155968962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      157148350..157155968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001291913.2: Suppressed sequence

      Description
      NM_001291913.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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