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    C130050O18Rikl RIKEN cDNA C130050O18 gene like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102546864, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C130050O18Riklprovided by RGD
    Official Full Name
    RIKEN cDNA C130050O18 gene likeprovided by RGD
    Primary source
    RGD:7673409
    See related
    AllianceGenome:RGD:7673409
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 36.9), Spleen (RPKM 35.1) and 9 other tissues See more
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    Genomic context

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    See C130050O18Rikl in Genome Data Viewer
    Location:
    12q11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (20343597..20355312, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (15229743..15241457, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (17321270..17333460, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1-type containing 2A Neighboring gene similar to human chromosome 7 open reading frame 50 Neighboring gene G protein-coupled estrogen receptor 1 Neighboring gene G protein-coupled receptor 146 Neighboring gene microRNA 339

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C130050O18Rikl

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      20343597..20355312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063271734.1 → XP_063127804.1  uncharacterized protein C130050O18Rikl

      UniProtKB/TrEMBL
      F1M1V7

    2. XM_006248979.5 → XP_006249041.1  uncharacterized protein C130050O18Rikl

      See identical proteins and their annotated locations for XP_006249041.1

      UniProtKB/TrEMBL
      F1M1V7
    Nucleotide Protein Strain
    Heading Accession and Version

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