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    Plbd1 phospholipase B domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 297694, updated on 9-Dec-2024

    Summary

    Official Symbol
    Plbd1provided by RGD
    Official Full Name
    phospholipase B domain containing 1provided by RGD
    Primary source
    RGD:1308734
    See related
    EnsemblRapid:ENSRNOG00000008933 AllianceGenome:RGD:1308734
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308734
    Summary
    Predicted to enable phospholipase activity. Predicted to be involved in phospholipid catabolic process. Predicted to be located in extracellular space. Predicted to be active in extracellular region. Orthologous to human PLBD1 (phospholipase B domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 747.6), Liver (RPKM 507.0) and 7 other tissues See more
    Orthologs
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    Genomic context

    See Plbd1 in Genome Data Viewer
    Location:
    4q43
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (171204198..171260488, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (169472983..169529277, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (170564387..170620681, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102185 Neighboring gene uncharacterized LOC102549638 Neighboring gene activating transcription factor 7 interacting protein Neighboring gene guanylate cyclase 2C Neighboring gene uncharacterized LOC134486648 Neighboring gene uncharacterized LOC134486649

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Interactions

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables phospholipase activity  
    Component Evidence Code Pubs
    is_active_in extracellular region  
    located_in extracellular space  
    located_in lysosome  

    General protein information

    Preferred Names
    phospholipase B-like 1
    Names
    LAMA-like protein 1
    lamina ancestor homolog 1
    phospholipase B domain-containing protein 1
    putative phospholipase B-like 1
    NP_001013949.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013927.1NP_001013949.1  phospholipase B-like 1 precursor

      See identical proteins and their annotated locations for NP_001013949.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085851
      UniProtKB/Swiss-Prot
      Q5U2V4
      Related
      ENSRNOP00000011930.5, ENSRNOT00000011930.8
      Conserved Domains (1) summary
      pfam04916
      Location:32545
      Phospholip_B; Phospholipase B

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      171204198..171260488 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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