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    Fam117b family with sequence similarity 117, member B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363236, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam117bprovided by RGD
    Official Full Name
    family with sequence similarity 117, member Bprovided by RGD
    Primary source
    RGD:1307676
    See related
    EnsemblRapid:ENSRNOG00000022066 AllianceGenome:RGD:1307676
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Als2cr13
    Summary
    Orthologous to human FAM117B (family with sequence similarity 117 member B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 127.2), Adrenal (RPKM 125.0) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Fam117b in Genome Data Viewer
    Location:
    9q31
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (68834334..68902543)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (61340284..61418531)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (66716969..66784487)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein receptor type 2 Neighboring gene large ribosomal subunit protein eL21-like Neighboring gene diazepam binding inhibitor, acyl-CoA binding protein, pseudogene 3 Neighboring gene uncharacterized LOC120094801 Neighboring gene islet cell autoantigen 1-like Neighboring gene WD repeat domain 12 Neighboring gene calcium responsive transcription factor

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    protein FAM117B
    Names
    amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108797.2NP_001102267.2  protein FAM117B

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A0A8I6ALF3, F1M8D5
      Related
      ENSRNOP00000029910.6, ENSRNOT00000031261.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      68834334..68902543
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039083858.2XP_038939786.1  protein FAM117B isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZYM6, A0A8I6ALF3
      Related
      ENSRNOP00000083133.1, ENSRNOT00000111864.2
      Conserved Domains (1) summary
      pfam15388
      Location:213493
      FAM117; Protein Family FAM117
    2. XM_039083860.2XP_038939788.1  protein FAM117B isoform X2

      Conserved Domains (1) summary
      pfam15388
      Location:90401
      FAM117; Protein Family FAM117