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    cup-16 Uncharacterized protein [ Caenorhabditis elegans ]

    Gene ID: 174393, updated on 9-Dec-2024

    Summary

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    Official Symbol
    cup-16
    Official Full Name
    Uncharacterized protein
    Primary source
    WormBase:WBGene00007919
    Locus tag
    CELE_C34C6.7
    See related
    AllianceGenome:WB:WBGene00007919
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in endocytosis and lysosomal protein catabolic process. Predicted to be located in lysosome. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See cup-16 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (8707155..8708860)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Homeobox protein ceh-7 Neighboring gene TPR_REGION domain-containing protein Neighboring gene Serpentine receptor class gamma-15 Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulators of Lysosome Function and Dynamics in Caenorhabditis elegans. Gee K, et al. G3 (Bethesda), 2017 Mar 10. PMID 28122949, Free PMC Article
    2. Gene regulatory network inference in long-lived C. elegans reveals modular properties that are predictive of novel aging genes. Suriyalaksh M, et al. iScience, 2022 Jan 21. PMID 35036864, Free PMC Article
    3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endocytosis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in lysosomal protein catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Uncharacterized protein
    NP_001254181.1
    • Confirmed by transcript evidence
    NP_001254182.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      8707155..8708860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001267252.2 → NP_001254181.1  Uncharacterized protein CELE_C34C6.7 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254181.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7WN88

    2. NM_001267253.3 → NP_001254182.1  Uncharacterized protein CELE_C34C6.7 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254182.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7WN89
    Nucleotide Protein
    Heading Accession and Version

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