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    SUMO5 small ubiquitinrelated modifier 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817837, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SUMO5
    Official Full Name
    small ubiquitinrelated modifier 5
    Primary source
    TAIR:AT2G32765
    Locus tag
    AT2G32765
    See related
    Araport:AT2G32765
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSUMO5; small ubiquitinrelated modifier 5; SUM5; SUMO 5
    Summary
    Encodes a small ubiquitin-like modifier (SUMO) protein that becomes covalently attached to various intracellular protein targets through an isopeptide bond. SUMOylation typically has a post-translational effect on the behavior of the target protein.
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    Genomic context

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    See SUMO5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (13894771..13895700)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Exostosin family protein Neighboring gene UV radiation resistance-associated protein Neighboring gene purple acid phosphatase 13 Neighboring gene ubiquitin-specific protease 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Distinctive properties of Arabidopsis SUMO paralogues support the in vivo predominant role of AtSUMO1/2 isoforms. Castaño-Miquel L, et al. Biochem J, 2011 Jun 15. PMID 21413927, Free PMC Article
    2. Evolution of a signalling system that incorporates both redundancy and diversity: Arabidopsis SUMOylation. Chosed R, et al. Biochem J, 2006 Sep 15. PMID 16740136, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_128836.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein tag activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein sumoylation IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    small ubiquitinrelated modifier 5
    NP_565752.1
    • small ubiquitinrelated modifier 5 (SUMO5); FUNCTIONS IN: protein tag; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 967 Blast hits to 966 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 573; Fungi - 118; Plants - 165; Viruses - 1; Other Eukaryotes - 110 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13894771..13895700
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128836.4 → NP_565752.1  small ubiquitinrelated modifier 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565752.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VZI7
      UniProtKB/TrEMBL
      A0A178VW71, A0A5S9X3H0
      Conserved Domains (1) summary
      cl28922
      Location:28 → 98
      Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VZI7.1

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