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    Embryo-specific protein 3, (ATS3) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 6240499, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Embryo-specific protein 3, (ATS3)
    Primary source
    TAIR:AT2G41475
    Locus tag
    AT2G41475
    See related
    Araport:AT2G41475
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (17294978..17296565, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein Neighboring gene F-box family protein Neighboring gene peroxidase superfamily protein Neighboring gene UDP-glcnac-adolichol phosphate glcnac-1-p-transferase Neighboring gene WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis lectin EULS3 is involved in stomatal closure. Van Hove J, et al. Plant Sci, 2015 Sep. PMID 26259197
    2. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001125029.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Embryo-specific protein 3, (ATS3)
    NP_001118501.1
    • Embryo-specific protein 3, (ATS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Embryo-specific 3 (InterPro:IPR010417); BEST Arabidopsis thaliana protein match is: Embryo-specific protein 3, (ATS3) (TAIR:AT5G62200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      17294978..17296565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125029.2 → NP_001118501.1  Embryo-specific protein 3, (ATS3) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118501.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80821, Q681K2
      UniProtKB/TrEMBL
      A0A178VX80, A0A5S9X664
      Conserved Domains (1) summary
      pfam06232
      Location:35 → 158
      ATS3; Embryo-specific protein 3, (ATS3)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q681K2.1

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