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    VEL2 vernalization5/VIN3-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816404, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VEL2
    Official Full Name
    vernalization5/VIN3-like protein
    Primary source
    TAIR:AT2G18880
    Locus tag
    AT2G18880
    See related
    Araport:AT2G18880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F19F24.8; F19F24_8; vernalization5/VIN3-like; vernalization5/VIN3-like 2; VIL3; VIN3-like 3
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    Genomic context

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    See VEL2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Sequence:
    Chromosome: 2; NC_003071.7 (8172189..8178995)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene vernalization5/VIN3-like protein Neighboring gene Afadin/alpha-actinin-binding protein Neighboring gene Protein kinase superfamily protein Neighboring gene Transducin/WD40 repeat-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC. Greb T, et al. Curr Biol, 2007 Jan 9. PMID 17174094
    2. The Plant Homeo Domain finger protein, VIN3-LIKE 2, is necessary for photoperiod-mediated epigenetic regulation of the floral repressor, MAF5. Kim DH, et al. Proc Natl Acad Sci U S A, 2010 Sep 28. PMID 20837520, Free PMC Article
    3. A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis. Sung S, et al. Genes Dev, 2006 Dec 1. PMID 17114575, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_127444.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in epigenetic regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in vernalization response IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    vernalization5/VIN3-like protein
    NP_179478.4
    • vernalization5/VIN3-like (VEL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: vernalization5/VIN3-like (TAIR:AT4G30200.3); Has 278 Blast hits to 186 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      8172189..8178995
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127444.4 → NP_179478.4  vernalization5/VIN3-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179478.4

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1DW35, O64618, Q5BPT4, Q84N40
      UniProtKB/TrEMBL
      A0A5S9WZG3, A0A654EU19
      Conserved Domains (2) summary
      smart00060
      Location:316 → 394
      FN3; Fibronectin type 3 domain
      pfam07227
      Location:119 → 239
      PHD_Oberon; PHD - plant homeodomain finger protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5BPT4.1

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