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    Zinc knuckle (CCHC-type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815423, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Zinc knuckle (CCHC-type) family protein
    Primary source
    TAIR:AT2G07760
    Locus tag
    AT2G07760
    See related
    Araport:AT2G07760
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T12J2.8; T12J2_8
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (3584420..3586278, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene pseudo Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_126778.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    Zinc knuckle (CCHC-type) family protein
    NP_178819.1
    • Zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28823.1); Has 107 Blast hits to 101 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 8; Plants - 87; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      3584420..3586278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_126778.1 → NP_178819.1  Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178819.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ETY8, O80793
      Conserved Domains (2) summary
      pfam14111
      Location:209 → 268
      DUF4283; Domain of unknown function (DUF4283)
      pfam14392
      Location:305 → 336
      zf-CCHC_4; Zinc knuckle
    Nucleotide Protein
    Heading Accession and Version

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