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    Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817220, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Pentatricopeptide repeat (PPR) superfamily protein
    Primary source
    TAIR:AT2G26790
    Locus tag
    AT2G26790
    See related
    Araport:AT2G26790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12C20.17; F12C20_17
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (11424163..11427792, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ARM repeat superfamily protein Neighboring gene ncRNA Neighboring gene Aldolase superfamily protein Neighboring gene Putative methyltransferase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Pentatricopeptide repeat (PPR) superfamily protein
    NP_001318293.1
    • Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G13800.1); Has 52197 Blast hits to 13814 proteins in 285 species: Archae - 9; Bacteria - 44; Metazoa - 475; Fungi - 643; Plants - 49485; Viruses - 2; Other Eukaryotes - 1539 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11424163..11427792 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336084.1 → NP_001318293.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81028
      UniProtKB/TrEMBL
      A0A178VQE9, A0A5S9X1N4
      Conserved Domains (4) summary
      PLN03081
      Location:153 → 521
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      PLN03218
      Location:387 → 668
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:390 → 417
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:708 → 756
      PPR_2; PPR repeat family

    2. NM_128236.2 → NP_180247.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180247.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81028
      UniProtKB/TrEMBL
      A0A178VQE9, A0A5S9X1N4
      Conserved Domains (4) summary
      PLN03081
      Location:153 → 521
      PLN03081; pentatricopeptide (PPR) repeat-containing protein; Provisional
      PLN03218
      Location:387 → 668
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:390 → 417
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:708 → 756
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81028.1

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