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    binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817096, updated on 18-Sep-2024

    Summary

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    Official Full Name
    binding protein
    Primary source
    TAIR:AT2G25570
    Locus tag
    AT2G25570
    See related
    Araport:AT2G25570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3N11.2; F3N11_2
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (10884966..10887979, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene DNAJ heat shock N-terminal domain-containing protein Neighboring gene C3HC4-type RING finger protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene Plant Tudor-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TOR dynamically regulates plant cell-cell transport. Brunkard JO, et al. Proc Natl Acad Sci U S A, 2020 Mar 3. PMID 32051250, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084491.1
    NM_001124912.1
    NM_128115.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within intercellular transport ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    binding protein
    NP_001077960.1
    • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 3322 Blast hits to 1984 proteins in 539 species: Archae - 0; Bacteria - 2536; Metazoa - 84; Fungi - 3; Plants - 65; Viruses - 6; Other Eukaryotes - 628 (source: NCBI BLink).
    NP_001118384.1
    • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_565600.1
    • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 3445 Blast hits to 2037 proteins in 553 species: Archae - 0; Bacteria - 2582; Metazoa - 139; Fungi - 7; Plants - 69; Viruses - 6; Other Eukaryotes - 642 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10884966..10887979 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001124912.1 → NP_001118384.1  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118384.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMF6, A0A654EXP2, A0MEQ1, Q9SLA6
      Conserved Domains (2) summary
      COG0790
      Location:74 → 253
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:146 → 175
      SLR; SLR repeat [structural motif]

    2. NM_128115.3 → NP_565600.1  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565600.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VMF6, A0A654EXP2, A0MEQ1, Q9SLA6
      Conserved Domains (2) summary
      COG0790
      Location:74 → 253
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:146 → 175
      SLR; SLR repeat [structural motif]

    3. NM_001084491.1 → NP_001077960.1  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077960.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A8MQN8
      Conserved Domains (3) summary
      smart00671
      Location:79 → 114
      SEL1; Sel1-like repeats
      COG0790
      Location:31 → 121
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:62 → 91
      SLR; SLR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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