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    TLP1 tubby like protein 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844025, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TLP1
    Official Full Name
    tubby like protein 1
    Primary source
    TAIR:AT1G76900
    Locus tag
    AT1G76900
    See related
    Araport:AT1G76900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtTLP1; F7O12.7; tubby like protein 1
    Summary
    Member of TLP family
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    Genomic context

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    See TLP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (28881539..28885023)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene ncRNA Neighboring gene Duplicated homeodomain-like superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334747.1
    NM_106341.2
    NM_179563.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tubby like protein 1
    NP_001319391.1
    • tubby like protein 1 (TLP1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 10 (TAIR:AT1G25280.1); Has 1519 Blast hits to 1116 proteins in 153 species: Archae - 0; Bacteria - 107; Metazoa - 432; Fungi - 111; Plants - 488; Viruses - 57; Other Eukaryotes - 324 (source: NCBI BLink).
    NP_849894.1
    • tubby like protein 1 (TLP1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 10 (TAIR:AT1G25280.1); Has 1520 Blast hits to 1117 proteins in 153 species: Archae - 0; Bacteria - 107; Metazoa - 432; Fungi - 112; Plants - 488; Viruses - 57; Other Eukaryotes - 324 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28881539..28885023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_179563.3 → NP_849894.1  tubby like protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849894.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZP59
      UniProtKB/TrEMBL
      A0A178WI43, A0A5S9WV08
      Conserved Domains (2) summary
      pfam01167
      Location:120 → 450
      Tub; Tub family
      pfam12937
      Location:57 → 99
      F-box-like

    2. NM_001334747.1 → NP_001319391.1  tubby like protein 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZP59
      UniProtKB/TrEMBL
      A0A178WI43, A0A5S9WV08
      Conserved Domains (2) summary
      pfam01167
      Location:120 → 450
      Tub; Tub family
      pfam12937
      Location:57 → 99
      F-box-like

    3. NM_106341.2 → NP_177816.1  tubby like protein 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177816.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZP59
      UniProtKB/TrEMBL
      A0A178WI43, A0A5S9WV08
      Conserved Domains (2) summary
      pfam01167
      Location:120 → 450
      Tub; Tub family
      pfam12937
      Location:57 → 99
      F-box-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZP59.1

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