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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838888, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT1G22830
    Locus tag
    AT1G22830
    See related
    Araport:AT1G22830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (8075996..8079137)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Low affinity potassium transport system protein Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ncRNA Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene ncRNA Neighboring gene CYTOCHROME C-1 Neighboring gene SNARE associated Golgi protein family Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001084113.2
    NM_102129.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001077582.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).
    NP_173696.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G71490.1); Has 41595 Blast hits to 13372 proteins in 196 species: Archae - 1; Bacteria - 4; Metazoa - 55; Fungi - 60; Plants - 41015; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8075996..8079137
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102129.3 → NP_173696.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173696.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23139, O80541, Q4V389, Q67YS4
      UniProtKB/TrEMBL
      A0A178WAW4, A0A5S9VME7
      Conserved Domains (2) summary
      PLN03077
      Location:34 → 659
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:492 → 519
      PPR; PPR repeat [structural motif]

    2. NM_001084113.2 → NP_001077582.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077582.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23139, O80541, Q4V389, Q67YS4
      UniProtKB/TrEMBL
      A0A178WAW4, A0A5S9VME7
      Conserved Domains (2) summary
      PLN03077
      Location:34 → 659
      PLN03077; Protein ECB2; Provisional
      sd00004
      Location:492 → 519
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4V389.1

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