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    PTR6 Major facilitator superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842516, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PTR6
    Official Full Name
    Major facilitator superfamily protein
    Primary source
    TAIR:AT1G62200
    Locus tag
    AT1G62200
    See related
    Araport:AT1G62200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtNPF8.5; AtPTR6; F19K23.13; F19K23_13; NPF8.5; NRT1/ PTR family 8.5; peptide transporter 6
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    Genomic context

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    See PTR6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (22980934..22984422, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Serine protease inhibitor (SERPIN) family protein Neighboring gene Serine protease inhibitor (SERPIN) family protein Neighboring gene ncRNA Neighboring gene 5'adenylylphosphosulfate reductase 2 Neighboring gene Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein Neighboring gene uncharacterized protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AtPTR4 and AtPTR6 are differentially expressed, tonoplast-localized members of the peptide transporter/nitrate transporter 1 (PTR/NRT1) family. Weichert A, et al. Planta, 2012 Feb. PMID 21904872
    2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtPTR6 is highly expressed in pollen and during senescence.
      Title: AtPTR4 and AtPTR6 are differentially expressed, tonoplast-localized members of the peptide transporter/nitrate transporter 1 (PTR/NRT1) family.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104901.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in oligopeptide transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plant-type vacuole membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Major facilitator superfamily protein
    NP_176411.2
    • Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 2 (TAIR:AT2G02040.1); Has 8090 Blast hits to 7669 proteins in 1476 species: Archae - 0; Bacteria - 3978; Metazoa - 789; Fungi - 491; Plants - 2227; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22980934..22984422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334020.1 → NP_001320833.1  Major facilitator superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP25, A0A5S9WNK8

    2. NM_001334021.1 → NP_001320834.1  Major facilitator superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AP16, A0A5S9WNK8

    3. NM_104901.2 → NP_176411.2  Major facilitator superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176411.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04585, Q93Z20
      UniProtKB/TrEMBL
      A0A5S9WNK8, A0A654EK80
      Conserved Domains (2) summary
      COG3104
      Location:46 → 544
      PTR2; Dipeptide/tripeptide permease [Amino acid transport and metabolism]
      pfam00854
      Location:124 → 550
      PTR2; POT family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93Z20.1

    Gene LinkOut

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