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    GLP5 germin-like protein 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837482, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GLP5
    Official Full Name
    germin-like protein 5
    Primary source
    TAIR:AT1G09560
    Locus tag
    AT1G09560
    See related
    Araport:AT1G09560
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14J9.22; F14J9_22; germin-like protein 5; PDGLP1; PLASMODESMAL GERMIN-LIKE PROTEIN 1
    Summary
    Encodes a plasodesmata-located protein involved in regulating primary root growth by controlling phloem-mediated allocation of resources between the primary and lateral root meristems.
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    Genomic context

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    See GLP5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (3093644..3094954)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myb domain protein 61 Neighboring gene Pectinacetylesterase family protein Neighboring gene phytochrome A Neighboring gene calcium uniporter-like protein (DUF607)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpression of Arabidopsis plasmodesmata germin-like proteins disrupts root growth and development. Ham BK, et al. Plant Cell, 2012 Sep. PMID 22960910, Free PMC Article
    2. Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis. Borderies G, et al. Electrophoresis, 2003 Oct. PMID 14595688
    3. Analysis of the Arabidopsis nuclear proteome and its response to cold stress. Bae MS, et al. Plant J, 2003 Dec. PMID 14617066
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100827.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within plasmodesmata-mediated intercellular transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plasmodesma IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    germin-like protein 5
    NP_172427.1
    • germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3093644..3094954
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100827.4 → NP_172427.1  germin-like protein 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172427.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I108, O80538, P94014, P94097
      UniProtKB/TrEMBL
      A0A178WEE7, A0A5S9TGZ0
      Conserved Domains (1) summary
      pfam00190
      Location:62 → 209
      Cupin_1; Cupin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P94014.2

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