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    SecY protein transport family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844208, updated on 18-Sep-2024

    Summary

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    Official Full Name
    SecY protein transport family protein
    Primary source
    TAIR:AT1G78720
    Locus tag
    AT1G78720
    See related
    Araport:AT1G78720
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9K20.24; F9K20_24
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (29605457..29607678)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Phospholipid/glycerol acyltransferase family protein Neighboring gene BES1/BZR1 homolog 4 Neighboring gene TRICHOME BIREFRINGENCE-LIKE 42 Neighboring gene FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein Neighboring gene RNI-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models. Chen J, et al. Front Plant Sci, 2012. PMID 22737156, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334841.1
    NM_001334842.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in endoplasmic reticulum HDA PubMed 

    General protein information

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    Preferred Names
    SecY protein transport family protein
    NP_001319405.1
    • SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein secretion, protein transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT2G34250.2); Has 4820 Blast hits to 4813 proteins in 2037 species: Archae - 276; Bacteria - 3174; Metazoa - 262; Fungi - 229; Plants - 171; Viruses - 0; Other Eukaryotes - 708 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29605457..29607678
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106519.2 → NP_177993.1  SecY protein transport family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177993.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W485, A0A654EQ54, Q9ZV90
      Conserved Domains (1) summary
      PTZ00219
      Location:1 → 473
      PTZ00219; Sec61 alpha subunit; Provisional

    2. NM_001334841.1 → NP_001319405.1  SecY protein transport family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W485, A0A654EQ54, Q9ZV90
      Conserved Domains (1) summary
      PTZ00219
      Location:1 → 473
      PTZ00219; Sec61 alpha subunit; Provisional

    3. NM_001334842.1 → NP_001320491.1  SecY protein transport family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W485, A0A1P8AMZ3
    Nucleotide Protein
    Heading Accession and Version

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