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    Fcf2 pre-rRNA processing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841918, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Fcf2 pre-rRNA processing protein
    Primary source
    TAIR:AT1G54770
    Locus tag
    AT1G54770
    See related
    Araport:AT1G54770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22H22.18; T22H22_18
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (20434550..20436453)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene AGAMOUS-like 85 Neighboring gene uncharacterized protein Neighboring gene Plant thionin family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333674.1
    NM_104352.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Fcf2 pre-rRNA processing protein
    NP_001319234.1
    • Fcf2 pre-rRNA processing protein; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: Fcf2 pre-rRNA processing protein (TAIR:AT5G30495.1); Has 332 Blast hits to 332 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20434550..20436453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333674.1 → NP_001319234.1  Fcf2 pre-rRNA processing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2A2, A0A384KZR6, A0A5S9WPS5, Q84K05
      Conserved Domains (1) summary
      pfam08698
      Location:64 → 158
      Fcf2; Fcf2 pre-rRNA processing

    2. NM_104352.4 → NP_175875.1  Fcf2 pre-rRNA processing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175875.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W2A2, A0A384KZR6, A0A5S9WPS5, Q84K05
      Conserved Domains (1) summary
      pfam08698
      Location:64 → 158
      Fcf2; Fcf2 pre-rRNA processing
    Nucleotide Protein
    Heading Accession and Version

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