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    DC1 domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842337, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DC1 domain-containing protein
    Primary source
    TAIR:AT1G60420
    Locus tag
    AT1G60420
    See related
    Araport:AT1G60420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtNRX1; NRX1; nucleoredoxin 1; T13D8.29; T13D8_29
    Summary
    Reduce transmission through pollen.
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (22261754..22264408)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene F-box family protein Neighboring gene ncRNA Neighboring gene actin-related protein C3 Neighboring gene pantothenate kinase 1 Neighboring gene galactinol synthase 7

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Natural variation among Arabidopsis thaliana accessions in tolerance to high magnesium supply. Niu Y, et al. Sci Rep, 2018 Sep 11. PMID 30206317, Free PMC Article
    2. Penetration of the stigma and style elicits a novel transcriptome in pollen tubes, pointing to genes critical for growth in a pistil. Qin Y, et al. PLoS Genet, 2009 Aug. PMID 19714218, Free PMC Article
    3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
    4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_104729.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables thioredoxin-disulfide reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within pollen tube guidance IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol HDA PubMed 
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    DC1 domain-containing protein
    NP_564756.1
    • DC1 domain-containing protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion, pollen tube growth, pollen tube guidance; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: protein kinase C-like zinc finger protein (TAIR:AT4G31240.2); Has 6688 Blast hits to 3903 proteins in 794 species: Archae - 4; Bacteria - 4185; Metazoa - 634; Fungi - 4; Plants - 553; Viruses - 0; Other Eukaryotes - 1308 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      22261754..22264408
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104729.4 → NP_564756.1  DC1 domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564756.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O80763, Q8LB68
      UniProtKB/TrEMBL
      A0A5S9WN98, A0A654EJN4
      Conserved Domains (3) summary
      cd03009
      Location:346 → 475
      TryX_like_TryX_NRX; Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. ...
      pfam03107
      Location:505 → 544
      C1_2; C1 domain
      cl00388
      Location:186 → 315
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O80763.1

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