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    RNA binding (RRM/RBD/RNP motifs) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817402, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNA binding (RRM/RBD/RNP motifs) family protein
    Primary source
    TAIR:AT2G28540
    Locus tag
    AT2G28540
    See related
    Araport:AT2G28540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T17D12.10; T17D12_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    13
    Sequence:
    Chromosome: 2; NC_003071.7 (12218019..12223873)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene vacuolar proton ATPase A1 Neighboring gene uncharacterized protein Neighboring gene DNA repair (Rad51) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036360.3
    NM_128414.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of CCR4-NOT complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RNA binding (RRM/RBD/RNP motifs) family protein
    NP_001031437.2
    • RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 940 Blast hits to 717 proteins in 219 species: Archae - 0; Bacteria - 26; Metazoa - 247; Fungi - 180; Plants - 143; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).
    NP_180421.3
    • RNA binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, RING-type (InterPro:IPR001841), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1); Has 925 Blast hits to 706 proteins in 218 species: Archae - 0; Bacteria - 26; Metazoa - 245; Fungi - 180; Plants - 141; Viruses - 0; Other Eukaryotes - 333 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      12218019..12223873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001036360.3 → NP_001031437.2  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031437.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VWU0, A0A7G2EDP7, Q0WQD5
      Conserved Domains (1) summary
      COG5175
      Location:2 → 316
      MOT2; Transcriptional repressor [Transcription]

    2. NM_128414.3 → NP_180421.3  RNA binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180421.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2EDP7, F4IIR1
      Conserved Domains (3) summary
      COG5175
      Location:2 → 316
      MOT2; Transcriptional repressor [Transcription]
      cd12438
      Location:104 → 203
      RRM_CNOT4; RNA recognition motif in Eukaryotic CCR4-NOT transcription complex subunit 4 (NOT4) and similar proteins
      pfam14570
      Location:9 → 60
      zf-RING_4; RING/Ubox like zinc-binding domain
    Nucleotide Protein
    Heading Accession and Version

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