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    UFD1 ubiquitin fusion degradation 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816666, updated on 18-Sep-2024

    Summary

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    Official Symbol
    UFD1
    Official Full Name
    ubiquitin fusion degradation 1
    Primary source
    TAIR:AT2G21270
    Locus tag
    AT2G21270
    See related
    Araport:AT2G21270
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3K23.3; F3K23_3; ubiquitin fusion degradation 1
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    Genomic context

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    See UFD1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Sequence:
    Chromosome: 2; NC_003071.7 (9107546..9110275)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene basic pentacysteine 4 Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene NAD(P)-linked oxidoreductase superfamily protein Neighboring gene NAD(P)-binding Rossmann-fold superfamily protein Neighboring gene 30S ribosomal protein S31 Neighboring gene ATP binding microtubule motor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a new family of protein kinases from Arabidopsis containing phosphoinositide 3/4-kinase and ubiquitin-like domains. Galvão RM, et al. Biochem J, 2008 Jan 1. PMID 17880284
    2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
    3. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001036307.2
    NM_001084464.1
    NM_001335738.1
    NM_001335739.1
    NM_127699.5

    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ubiquitin fusion degradation 1
    NP_001031384.1
    • ubiquitin fusion degradation 1 (UFD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G38930.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_001077933.1
    • ubiquitin fusion degradation 1 (UFD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G38930.2); Has 705 Blast hits to 703 proteins in 222 species: Archae - 8; Bacteria - 2; Metazoa - 165; Fungi - 211; Plants - 127; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
    NP_565504.1
    • ubiquitin fusion degradation 1 (UFD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion degradation protein UFD1 (InterPro:IPR004854); BEST Arabidopsis thaliana protein match is: Ubiquitin fusion degradation UFD1 family protein (TAIR:AT4G38930.2); Has 702 Blast hits to 700 proteins in 221 species: Archae - 8; Bacteria - 2; Metazoa - 164; Fungi - 209; Plants - 127; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      9107546..9110275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127699.5 → NP_565504.1  ubiquitin fusion degradation 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565504.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WZU6, A0A654EUR8, Q9SJV0
      Conserved Domains (1) summary
      pfam03152
      Location:13 → 183
      UFD1; Ubiquitin fusion degradation protein UFD1

    2. NM_001335739.1 → NP_001323741.1  ubiquitin fusion degradation 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WZU6, A0A654EUR8, Q9SJV0
      Conserved Domains (1) summary
      pfam03152
      Location:13 → 183
      UFD1; Ubiquitin fusion degradation protein UFD1

    3. NM_001335738.1 → NP_001323742.1  ubiquitin fusion degradation 1 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WZU6, A0A654EUR8, Q9SJV0
      Conserved Domains (1) summary
      pfam03152
      Location:13 → 183
      UFD1; Ubiquitin fusion degradation protein UFD1

    4. NM_001084464.1 → NP_001077933.1  ubiquitin fusion degradation 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077933.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EUR8, A8MQW3
      Conserved Domains (1) summary
      pfam03152
      Location:34 → 204
      UFD1; Ubiquitin fusion degradation protein UFD1

    5. NM_001036307.2 → NP_001031384.1  ubiquitin fusion degradation 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031384.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9WZU6, A0A654EUR8, Q9SJV0
      Conserved Domains (1) summary
      pfam03152
      Location:13 → 183
      UFD1; Ubiquitin fusion degradation protein UFD1
    Nucleotide Protein
    Heading Accession and Version

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