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    TAT3 tyrosine aminotransferase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817022, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TAT3
    Official Full Name
    tyrosine aminotransferase 3
    Primary source
    TAIR:AT2G24850
    Locus tag
    AT2G24850
    See related
    Araport:AT2G24850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F27C12.23; F27C12_23; TAT; TYROSINE AMINOTRANSFERASE; tyrosine aminotransferase 3
    Summary
    Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.
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    Genomic context

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    See TAT3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Sequence:
    Chromosome: 2; NC_003071.7 (10582074..10585216, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene translocon at the inner envelope membrane of chloroplasts 55-II Neighboring gene zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein Neighboring gene AGAMOUS-like 61 Neighboring gene DnaJ/Hsp40 cysteine-rich domain superfamily protein Neighboring gene Plant self-incompatibility protein S1 family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Jasmonic acid-dependent and -independent signaling pathways control wound-induced gene activation in Arabidopsis thaliana. Titarenko E, et al. Plant Physiol, 1997 Oct. PMID 9342878, Free PMC Article
    2. A histochemical reporter system to study extracellular ATP response in plants. Sowders JM, et al. Front Plant Sci, 2023. PMID 37332691, Free PMC Article
    3. TIME FOR COFFEE represses accumulation of the MYC2 transcription factor to provide time-of-day regulation of jasmonate signaling in Arabidopsis. Shin J, et al. Plant Cell, 2012 Jun. PMID 22693280, Free PMC Article
    4. A downstream mediator in the growth repression limb of the jasmonate pathway. Yan Y, et al. Plant Cell, 2007 Aug. PMID 17675405, Free PMC Article
    5. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_128044.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables L-tyrosine-2-oxoglutarate transaminase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to ATP IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to jasmonic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tyrosine aminotransferase 3
    NP_180058.1
    • tyrosine aminotransferase 3 (TAT3); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT2G20610.1); Has 40308 Blast hits to 40304 proteins in 3024 species: Archae - 944; Bacteria - 29187; Metazoa - 746; Fungi - 752; Plants - 1298; Viruses - 0; Other Eukaryotes - 7381 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10582074..10585216 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128044.3 → NP_180058.1  tyrosine aminotransferase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180058.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEN9, Q9SK47
      UniProtKB/TrEMBL
      A0A178VYB4, A0A5S9X1E2, A0A654F0V8
      Conserved Domains (1) summary
      TIGR01265
      Location:16 → 424
      tyr_nico_aTase; tyrosine/nicotianamine family aminotransferase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SK47.1

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