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    GRP3S glycine-rich protein 3 short isoform [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815086, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GRP3S
    Official Full Name
    glycine-rich protein 3 short isoform
    Primary source
    TAIR:AT2G05380
    Locus tag
    AT2G05380
    See related
    Araport:AT2G05380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F16J10.7; F16J10_7; glycine-rich protein 3 short isoform
    Summary
    glycine-rich protein 3 short isoform (GRP3S) mRNA, complete
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    Genomic context

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    See GRP3S in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (1966610..1968142)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene F-box associated ubiquitination effector family protein Neighboring gene RNA-dependent RNA polymerase-like protein Neighboring gene pseudo Neighboring gene Ubiquitin-specific protease family C19-related protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interaction of the Arabidopsis receptor protein kinase Wak1 with a glycine-rich protein, AtGRP-3. Park AR, et al. J Biol Chem, 2001 Jul 13. PMID 11335717
    2. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001124801.1
    NM_126561.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    glycine-rich protein 3 short isoform
    NP_001118273.1
    • glycine-rich protein 3 short isoform (GRP3S); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 (TAIR:AT2G05520.5); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_565325.1
    • glycine-rich protein 3 short isoform (GRP3S); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: glycine-rich protein 3 (TAIR:AT2G05520.6); Has 24661 Blast hits to 8473 proteins in 834 species: Archae - 8; Bacteria - 5428; Metazoa - 9799; Fungi - 1363; Plants - 5177; Viruses - 364; Other Eukaryotes - 2522 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      1966610..1968142
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335279.1 → NP_001324794.1  glycine-rich protein 3 short isoform [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLH2, A0A1P8B1B5, A0A5S9WXC4, Q8L5Z5

    2. NM_126561.4 → NP_565325.1  glycine-rich protein 3 short isoform [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565325.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94A93, Q9SHT6, Q9ZSJ6
      UniProtKB/TrEMBL
      A0A178VLH2, A0A5S9WXC4, Q8L5Z5

    3. NM_001124801.1 → NP_001118273.1  glycine-rich protein 3 short isoform [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001118273.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VLH2, A0A5S9WXC4, C0Z2S1, Q8L5Z5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZSJ6.2

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