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    ASL9 ASYMMETRIC LEAVES 2-like 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838223, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ASL9
    Official Full Name
    ASYMMETRIC LEAVES 2-like 9
    Primary source
    TAIR:AT1G16530
    Locus tag
    AT1G16530
    See related
    Araport:AT1G16530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASYMMETRIC LEAVES 2-like 9; F3O9.33; F3O9_33; LBD3; LOB DOMAIN-CONTAINING PROTEIN 3
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    Genomic context

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    See ASL9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (5651268..5652883, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene interactor of constitutive active ROPs protein Neighboring gene molybdenum cofactor sulfurase (LOS5) (ABA3) Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cytokinins initiate secondary growth in the Arabidopsis root through a set of LBD genes. Ye L, et al. Curr Biol, 2021 Aug 9. PMID 34129827, Free PMC Article
    2. ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development. Hou Q, et al. Mol Plant, 2023 Aug 7. PMID 37501369
    3. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
    4. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
    5. 14-3-3 proteins fine-tune plant nutrient metabolism. Shin R, et al. FEBS Lett, 2011 Jan 3. PMID 21094157

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101518.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokinin-activated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in root development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in secondary growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ASYMMETRIC LEAVES 2-like 9
    NP_173102.1
    • ASYMMETRIC LEAVES 2-like 9 (ASL9); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: Lateral organ boundaries (LOB) domain family protein (TAIR:AT2G30130.1); Has 986 Blast hits to 981 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 986; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5651268..5652883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101518.4 → NP_173102.1  ASYMMETRIC LEAVES 2-like 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173102.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG63, Q9SA51
      UniProtKB/TrEMBL
      A0A178W2T7, A0A5S9URZ2
      Conserved Domains (1) summary
      pfam03195
      Location:14 → 113
      LOB; Lateral organ boundaries (LOB) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SA51.1

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