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    USPL1 unknown seed protein like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841355, updated on 18-Sep-2024

    Summary

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    Official Symbol
    USPL1
    Official Full Name
    unknown seed protein like 1
    Primary source
    TAIR:AT1G49320
    Locus tag
    AT1G49320
    See related
    Araport:AT1G49320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATUSPL1; F13F21.25; F13F21_25; unknown seed protein like 1
    Summary
    Encodes USPL1, a BURP domain protein targeted to the protein storage vacuoles. Overexpression of USPL1 affects seed development, protein storage vacuoles and lipid vesicles morphology and function.
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    Genomic context

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    See USPL1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (18246305..18248088)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RAB GTPase homolog G3E Neighboring gene uncharacterized protein Neighboring gene hydroxyproline-rich glycoprotein family protein Neighboring gene Phosphatidylinositol 3- and 4-kinase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The BURP domain protein AtUSPL1 of Arabidopsis thaliana is destined to the protein storage vacuoles and overexpression of the cognate gene distorts seed development. Van Son L, et al. Plant Mol Biol, 2009 Nov. PMID 19639386
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_103822.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within seed development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in protein storage vacuole IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    unknown seed protein like 1
    NP_175357.1
    • unknown seed protein like 1 (USPL1); CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: BURP domain-containing protein (TAIR:AT5G25610.1); Has 493 Blast hits to 491 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 493; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      18246305..18248088
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103822.3 → NP_175357.1  unknown seed protein like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175357.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9XI99
      UniProtKB/TrEMBL
      A0A178WIT9, A0A5S9WN92
      Conserved Domains (1) summary
      smart01045
      Location:56 → 280
      BURP; The BURP domain is found at the C-terminus of several different plant proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XI99.1

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