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    VHA-E3 vacuolar H+-ATPase subunit E isoform 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842725, updated on 18-Sep-2024

    Summary

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    Official Symbol
    VHA-E3
    Official Full Name
    vacuolar H+-ATPase subunit E isoform 3
    Primary source
    TAIR:AT1G64200
    Locus tag
    AT1G64200
    See related
    Araport:AT1G64200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22C12.4; F22C12_4; vacuolar H+-ATPase subunit E isoform 3
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    Genomic context

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    See VHA-E3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (23828284..23830100, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene 6-phosphogluconate dehydrogenase family protein Neighboring gene ncRNA Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene translocase of outer membrane 7 kDa subunit 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional analysis of Arabidopsis V-ATPase subunit VHA-E isoforms. Dettmer J, et al. Eur J Cell Biol, 2010 Feb-Mar. PMID 19945769
    2. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
    3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    4. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article
    5. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001334150.1
    NM_105094.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables proton-transporting ATPase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 
    part_of proton-transporting two-sector ATPase complex, catalytic domain IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    vacuolar H+-ATPase subunit E isoform 3
    NP_176602.1
    • vacuolar H+-ATPase subunit E isoform 3 (VHA-E3); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole, mitochondrial proton-transporting ATP synthase complex; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar ATP synthase subunit E1 (TAIR:AT4G11150.1); Has 792 Blast hits to 792 proteins in 304 species: Archae - 92; Bacteria - 13; Metazoa - 250; Fungi - 149; Plants - 127; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      23828284..23830100 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334149.1 → NP_001320763.1  vacuolar H+-ATPase subunit E isoform 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANX8, A0A7G2E3W5

    2. NM_105094.3 → NP_176602.1  vacuolar H+-ATPase subunit E isoform 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176602.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P0CAN7
      UniProtKB/TrEMBL
      A0A7G2E3W5
      Conserved Domains (2) summary
      COG1390
      Location:10 → 232
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      pfam01991
      Location:16 → 231
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    3. NM_001334150.1 → NP_001320764.1  vacuolar H+-ATPase subunit E isoform 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8ANV6, A0A7G2E3W5
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CAN7.1

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