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    YSL8 YELLOW STRIPE like 8 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841257, updated on 18-Sep-2024

    Summary

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    Official Symbol
    YSL8
    Official Full Name
    YELLOW STRIPE like 8
    Primary source
    TAIR:AT1G48370
    Locus tag
    AT1G48370
    See related
    Araport:AT1G48370
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F11A17.8; F11A17_8; YELLOW STRIPE like 8
    Summary
    Arabidopsis thaliana metal-nicotianamine transporter YSL4
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    Genomic context

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    See YSL8 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (17874436..17877462)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Ribosomal L18p/L5e family protein Neighboring gene uncharacterized protein Neighboring gene zinc ion binding/nucleic acid binding/hydrolase Neighboring gene root hair initiation protein root hairless 1 (RHL1) Neighboring gene RNI-like superfamily protein Neighboring gene F-box/RNI-like/FBD-like domains-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001333329.1
    NM_103733.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    YELLOW STRIPE like 8
    NP_564525.1
    • YELLOW STRIPE like 8 (YSL8); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 1797 Blast hits to 1745 proteins in 565 species: Archae - 19; Bacteria - 910; Metazoa - 0; Fungi - 269; Plants - 459; Viruses - 1; Other Eukaryotes - 139 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      17874436..17877462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_103733.4 → NP_564525.1  YELLOW STRIPE like 8 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564525.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6R3K4, Q94BX5, Q9SX70
      UniProtKB/TrEMBL
      A0A178W3Y3, A0A7G2DZG4
      Conserved Domains (1) summary
      pfam03169
      Location:71 → 695
      OPT; OPT oligopeptide transporter protein

    2. NM_001333329.1 → NP_001321378.1  YELLOW STRIPE like 8 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AQR0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6R3K4.2

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