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    PERK9 Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 3767664, updated on 18-Sep-2024

    Summary

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    Official Symbol
    PERK9
    Official Full Name
    Protein kinase superfamily protein
    Primary source
    TAIR:AT1G68690
    Locus tag
    AT1G68690
    See related
    Araport:AT1G68690
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtPERK9; F24J5.8; F24J5_8; proline-rich extensin-like receptor kinase 9
    Summary
    Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).
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    Genomic context

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    See PERK9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Sequence:
    Chromosome: 1; NC_003070.9 (25788305..25792324)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myb-like transcription factor family protein Neighboring gene SH3/FCH domain protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PERK-KIPK-KCBP signalling negatively regulates root growth in Arabidopsis thaliana. Humphrey TV, et al. J Exp Bot, 2015 Jan. PMID 25262228, Free PMC Article
    2. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334374.1
    NM_001334375.1
    NM_105541.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein kinase binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Protein kinase superfamily protein
    NP_177036.1
    • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like receptor kinase 10 (TAIR:AT1G26150.1); Has 570812 Blast hits to 252659 proteins in 6239 species: Archae - 1199; Bacteria - 114498; Metazoa - 211977; Fungi - 79751; Plants - 80044; Viruses - 11567; Other Eukaryotes - 71776 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25788305..25792324
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334373.1 → NP_001320810.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SX31
      UniProtKB/TrEMBL
      A0A178WAI3, A0A5S9WQL4
      Conserved Domains (1) summary
      cd14066
      Location:383 → 652
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    2. NM_105541.3 → NP_177036.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177036.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SX31
      UniProtKB/TrEMBL
      A0A178WAI3, A0A5S9WQL4
      Conserved Domains (1) summary
      cd14066
      Location:383 → 652
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    3. NM_001334374.1 → NP_001320812.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SX31
      UniProtKB/TrEMBL
      A0A178WAI3, A0A5S9WQL4
      Conserved Domains (1) summary
      cd14066
      Location:383 → 652
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

    4. NM_001334375.1 → NP_001320811.1  Protein kinase superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAI3, A0A1P8AP18
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SX31.1

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